Basic Information
Locus ID:
BH08.2095
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 28548500 | 28552743 | + | BH08.2095 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 74,255.27 Da | 36.61 | 90.92 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 291 | 593 | 1.39793E-153 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 296 | 589 | 1.8E-32 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 189 | 274 | 5.86E-9 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 53 | 186 | 6.8E-22 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 290 | 594 | 1.54E-47 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 53 | 188 | 3.9E-16 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 289 | 594 | 2.6E-46 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 291 | 594 | 29.741554 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 54 | 187 | 17.106678 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 656 | 676 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 655 | 676 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 4.62E-182 |
| RefSeq | XP_034599849.1 | glycerophosphodiester phosphodiesterase GDPDL3-like isoform X2 [Setaria viridis] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 4.45E-181 | |
| TrEMBL | A0A4U6U9Q7 | glycerophosphodiester phosphodiesterase OS=Setaria viridis OX=4556 GN=SEVIR_6G209900v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology