Basic Information
Locus ID:
BH08.2030
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 27978900 | 27982240 | + | BH08.2030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.25 | 95,349.38 Da | 39.03 | 78.00 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 228 | 323 | 2.3E-5 | IPR013187 |
| Pfam | PF00646 | F-box domain | 20 | 56 | 4.6E-6 | IPR001810 |
| Pfam | PF00646 | F-box domain | 510 | 545 | 7.3E-5 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 687 | 759 | 8.4E-7 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 508 | 545 | 1.19E-8 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 16 | 56 | 1.11E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 504 | 550 | 1.7E-6 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 17 | 58 | 1.7E-6 | - |
| SMART | SM00256 | fbox_2 | 22 | 65 | 6.4E-4 | IPR001810 |
| SMART | SM00256 | fbox_2 | 511 | 551 | 1.3E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 626 | 785 | 1.5E-11 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 110 | 328 | 9.6E-24 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49980.1 | F-box and associated interaction domains-containing protein. | 4.8E-7 |
| RefSeq | XP_004974816.1 | F-box protein At3g07870 [Setaria italica] | 4.82E-199 |
| Q9SN20 | Putative F-box protein At3g49980 OS=Arabidopsis thaliana OX=3702 GN=At3g49980 PE=4 SV=1 | 4.76E-6 | |
| TrEMBL | K3YLH9 | F-box domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1 | 1.31E-197 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology