Basic Information
Locus ID:
BH08.2016
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Raffinose synthase or seed imbibition protein Sip1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 27857900 | 27864893 | + | BH08.2016 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.97 | 140,100.55 Da | 55.14 | 75.45 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05691 | Raffinose synthase or seed imbibition protein Sip1 | 544 | 1272 | 0.0 | IPR008811 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 733 | 1063 | 6.32E-57 | IPR017853 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 735 | 1050 | 2.3E-13 | IPR013785 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 422 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 444 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55740.1 | seed imbibition 1. | 0 |
| RefSeq | XP_034599812.1 | probable galactinol--sucrose galactosyltransferase 1 [Setaria viridis] | 0 |
| Q84VX0 | Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=RFS1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835FGK6 | galactinol--sucrose galactosyltransferase OS=Digitaria exilis OX=1010633 GN=HU200_012312 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology