Basic Information
Locus ID:
BH08.1919
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 27093416 | 27100379 | - | BH08.1919 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 107,556.21 Da | 58.23 | 67.62 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 119 | 156 | 7.5E-10 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 437 | 740 | 1.2E-45 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 433 | 746 | 2.16E-84 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 116 | 158 | 8.37E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 430 | 754 | 4.6E-90 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 108 | 159 | 4.7E-12 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 119 | 156 | 11.602668 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 437 | 743 | 51.161343 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 438 | 453 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 119 | 156 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 811 | 851 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 759 | 792 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 309 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 905 | 973 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 818 | 851 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 926 | 947 | - | - |
| Coils | Coil | Coil | 45 | 65 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 2.11E-154 |
| RefSeq | XP_025820753.1 | ubiquitin carboxyl-terminal hydrolase 17 [Panicum hallii] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 2.04E-153 | |
| TrEMBL | A0A2S3I392 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Panicum hallii OX=206008 GN=PAHAL_6G238600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology