Basic Information
Locus ID:
BH08.183
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 1748574 | 1751967 | - | BH08.183 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 56,300.32 Da | 52.55 | 98.75 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 304 | 363 | 9.5E-13 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 449 | 517 | 4.7E-23 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 378 | 439 | 2.0E-16 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 444 | 519 | 9.33E-26 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 296 | 366 | 1.41E-15 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 366 | 441 | 2.23E-17 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 443 | 522 | 4.2E-31 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 301 | 363 | 6.8E-17 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 364 | 442 | 1.3E-21 | - |
| SMART | SM00213 | ubq_7 | 369 | 439 | 1.2E-11 | IPR000626 |
| SMART | SM00213 | ubq_7 | 447 | 518 | 5.8E-24 | IPR000626 |
| SMART | SM00213 | ubq_7 | 302 | 366 | 1.1E-12 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 367 | 439 | 15.209327 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 302 | 363 | 12.35675 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 447 | 517 | 21.894373 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 499 | 520 | 1.5E-21 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 478 | 498 | 1.5E-21 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 457 | 477 | 1.5E-21 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.1 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 4.11E-66 |
| RefSeq | XP_034599218.1 | polyubiquitin-like [Setaria viridis] | 1.9E-99 |
| P0CH33 | Polyubiquitin 11 OS=Arabidopsis thaliana OX=3702 GN=UBQ11 PE=2 SV=1 | 3.96E-65 | |
| TrEMBL | A0A4V6D571 | Ubiquitin-like domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_6G079200v2 PE=4 SV=1 | 4.3E-98 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||