Basic Information
Locus ID:
BH08.175
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 1697400 | 1697687 | + | BH08.175 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 9,479.69 Da | 56.84 | 70.11 | 0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17123 | RING-like zinc finger | 12 | 42 | 3.2E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 11 | 62 | 9.24E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 67 | 5.4E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 12 | 55 | 1.4E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 12 | 55 | 10.364846 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G37890.2 | Zinc finger (C3HC4-type RING finger) family protein. | 1.84E-8 |
| RefSeq | XP_008791497.1 | E3 ubiquitin-protein ligase WAV3-like [Phoenix dactylifera] | 2.14E-8 |
| F4JSV3 | Probable E3 ubiquitin-protein ligase EDA40 OS=Arabidopsis thaliana OX=3702 GN=EDA40 PE=2 SV=1 | 1.83E-7 | |
| TrEMBL | A0A8B7C4A0 | E3 ubiquitin-protein ligase WAV3-like OS=Phoenix dactylifera OX=42345 GN=LOC103708381 PE=4 SV=1 | 4.85E-7 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||