Basic Information
Locus ID:
BH08.1665
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 24374562 | 24376690 | + | BH08.1665 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.05 | 22,428.63 Da | 48.29 | 82.78 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF09280 | XPC-binding domain | 79 | 134 | 3.9E-19 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 162 | 196 | 6.6E-11 | IPR015940 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 77 | 141 | 5.76E-20 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 148 | 203 | 1.89E-12 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 152 | 201 | 1.4E-20 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 69 | 134 | 2.2E-21 | IPR036353 |
| SMART | SM00727 | CBM | 77 | 120 | 3.1E-6 | IPR006636 |
| SMART | SM00165 | uba_6 | 161 | 198 | 1.1E-7 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 158 | 199 | 14.812021 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 105 | 127 | 3.8E-29 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 155 | 171 | 3.8E-29 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 187 | 202 | 3.8E-29 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 172 | 186 | 3.8E-29 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 52 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 1.69E-59 |
| RefSeq | XP_051187973.1 | probable ubiquitin receptor RAD23 isoform X4 [Lolium perenne] | 1.78E-91 |
| Q40742 | Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2 | 3.99E-72 | |
| TrEMBL | A0A0A8YH22 | Ubiquitin receptor RAD23 OS=Arundo donax OX=35708 PE=3 SV=1 | 6.76E-97 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology