Basic Information
Locus ID:
BH08.1559
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Trypsin-like peptidase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 22638799 | 22664093 | - | BH08.1559 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.38 | 352,901.72 Da | 42.16 | 80.08 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 1940 | 2025 | 9.2631E-9 | - |
| CDD | cd01647 | RT_LTR | 2178 | 2358 | 7.62088E-75 | - |
| Pfam | PF13456 | Reverse transcriptase-like | 2549 | 2629 | 6.4E-9 | IPR002156 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 2423 | 2491 | 4.8E-14 | IPR041577 |
| Pfam | PF00665 | Integrase core domain | 2799 | 2895 | 2.1E-13 | IPR001584 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 2196 | 2358 | 3.0E-17 | IPR000477 |
| Pfam | PF17921 | Integrase zinc binding domain | 2729 | 2780 | 3.9E-8 | IPR041588 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 2795 | 2918 | 2.02E-31 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 2139 | 2509 | 1.67E-107 | IPR043502 |
| SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 316 | 459 | 1.48E-8 | IPR009003 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 2544 | 2629 | 4.17E-12 | IPR012337 |
| Gene3D | G3DSA:3.30.70.270 | - | 2221 | 2358 | 7.9E-55 | IPR043128 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 2140 | 2283 | 7.9E-55 | - |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 1920 | 2030 | 8.8E-11 | IPR021109 |
| Gene3D | G3DSA:3.10.20.370 | - | 2452 | 2501 | 4.5E-5 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 2789 | 2962 | 1.1E-34 | IPR036397 |
| Gene3D | G3DSA:3.30.420.10 | - | 2544 | 2652 | 2.5E-14 | IPR036397 |
| Gene3D | G3DSA:3.30.70.270 | - | 2368 | 2451 | 8.4E-22 | IPR043128 |
| Gene3D | G3DSA:1.10.340.70 | - | 2690 | 2780 | 5.2E-11 | - |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 2541 | 2691 | 9.071592 | IPR002156 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 2795 | 2974 | 21.197628 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3127 | 3150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3130 | 3150 | - | - |
| Coils | Coil | Coil | 597 | 617 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_052161258.1 | uncharacterized protein LOC127778677 isoform X1 [Oryza glaberrima] | 5.05E-282 |
| Q99315 | Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3 | 6.07E-41 | |
| TrEMBL | L0P3P1 | PH01B001I13.4 protein OS=Phyllostachys edulis OX=38705 GN=PH01B001I13.4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 30 | AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053643, gene-QYE76_056610 |