Basic Information
Locus ID:
BH08.1529
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 22134679 | 22136563 | + | BH08.1529 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.07 | 39,819.46 Da | 42.01 | 62.28 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 295 | 335 | 5.88809E-10 | - |
| Pfam | PF13639 | Ring finger domain | 295 | 335 | 9.5E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 292 | 345 | 1.6E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 278 | 342 | 1.8E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 295 | 334 | 5.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 295 | 335 | 11.884405 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 290 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015649283.1 | probable E3 ubiquitin-protein ligase ATL44 [Oryza sativa Japonica Group] | 8.29E-13 |
| TrEMBL | A0A3L6RI82 | RING-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM13G11860 PE=4 SV=1 | 8.91E-41 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||