Basic Information
Locus ID:
BH08.1299
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 19178975 | 19185230 | + | BH08.1299 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.68 | 100,366.95 Da | 79.62 | 62.07 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 297 | 339 | 1.35237E-16 | - |
| Pfam | PF13639 | Ring finger domain | 297 | 339 | 3.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 293 | 345 | 1.2E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 261 | 345 | 1.9E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 298 | 338 | 4.0E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 298 | 339 | 13.418717 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 833 | 913 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 483 | 542 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 717 | 751 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 843 | 860 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 674 | 690 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 503 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 364 | 397 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 526 | 542 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 673 | 696 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 375 | 395 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52150.1 | RING/U-box superfamily protein. | 4.83E-6 |
| RefSeq | XP_004955057.1 | E3 ubiquitin-protein ligase RNF181 [Setaria italica] | 1.64E-28 |
| Q9H9V4 | RING finger protein 122 OS=Homo sapiens OX=9606 GN=RNF122 PE=1 SV=2 | 3.71E-12 | |
| TrEMBL | A0A368PQ93 | RING-type domain-containing protein (Fragment) OS=Setaria italica OX=4555 GN=SETIT_1G222900v2 PE=4 SV=1 | 1.06E-27 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||