Basic Information
Locus ID:
BH08.1298
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 19170716 | 19172351 | + | BH08.1298 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.21 | 40,367.46 Da | 68.96 | 75.80 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 290 | 332 | 7.0223E-17 | - |
| Pfam | PF13639 | Ring finger domain | 290 | 332 | 1.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 286 | 338 | 3.3E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 254 | 338 | 4.6E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 291 | 331 | 4.1E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 291 | 332 | 13.359705 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 376 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52150.1 | RING/U-box superfamily protein. | 2.07E-6 |
| RefSeq | XP_039788247.1 | E3 ubiquitin-protein ligase RNF181-like [Panicum virgatum] | 2.33E-30 |
| Q9H9V4 | RING finger protein 122 OS=Homo sapiens OX=9606 GN=RNF122 PE=1 SV=2 | 4.53E-13 | |
| TrEMBL | A0A8T0WNB0 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_1NG019672 PE=4 SV=1 | 5.27E-29 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||