halophFGD

Basic Information

Locus ID: BH08.1101

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: LRR-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
BH08	15679926	15681406	+	BH08.1101

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.28	52,994.31 Da	49.24	90.69	-0.14

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08387	FBD	373	412	4.2E-7	IPR006566
Pfam	PF00646	F-box domain	34	72	2.1E-4	IPR001810
SUPERFAMILY	SSF81383	F-box domain	23	71	4.71E-8	IPR036047
SUPERFAMILY	SSF52047	RNI-like	151	397	3.22E-9	-
Gene3D	G3DSA:1.20.1280.50	-	35	73	5.4E-6	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	137	418	7.9E-9	IPR032675
ProSiteProfiles	PS50181	F-box domain profile.	31	78	8.623154	IPR001810
MobiDBLite	mobidb-lite	consensus disorder prediction	1	32	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_025822370.1	putative F-box/LRR-repeat protein At5g41840 [Panicum hallii]	8.81E-55
TrEMBL	A0A3L6PN83	FBD domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM14G10040 PE=4 SV=1	8.42E-116

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	2	BH08.1101, CH08.1212
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_7BG0591040, gene-QOZ80_7BG0591060
Poaceae	Sporobolus alterniflorus	2	Chr19G016940, Chr24G000100
Poaceae	Zoysia japonica	2	nbis-gene-38250, nbis-gene-54026