Basic Information
Locus ID:
BH08.1029
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 13520570 | 13525303 | - | BH08.1029 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 55,389.31 Da | 50.23 | 94.11 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 133 | 169 | 2.6E-5 | IPR001810 |
| Pfam | PF16987 | KIX domain | 8 | 78 | 6.5E-15 | IPR036546 |
| SUPERFAMILY | SSF52047 | RNI-like | 227 | 422 | 6.28E-9 | - |
| SUPERFAMILY | SSF47040 | Kix domain of CBP (creb binding protein) | 8 | 75 | 1.23E-5 | IPR036529 |
| SUPERFAMILY | SSF81383 | F-box domain | 130 | 188 | 6.28E-13 | IPR036047 |
| Gene3D | G3DSA:1.10.246.20 | Coactivator CBP, KIX domain | 8 | 81 | 3.2E-8 | IPR036529 |
| Gene3D | G3DSA:1.20.1280.50 | - | 122 | 227 | 7.8E-9 | - |
| SMART | SM00256 | fbox_2 | 137 | 176 | 0.001 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 131 | 167 | 10.027357 | IPR001810 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56420.1 | F-box/RNI-like/FBD-like domains-containing protein. | 6.55E-18 |
| RefSeq | XP_052166428.1 | putative F-box/LRR-repeat protein At5g38386 isoform X2 [Oryza glaberrima] | 8.82E-150 |
| Q9FM89 | F-box/FBD/LRR-repeat protein At5g56420 OS=Arabidopsis thaliana OX=3702 GN=At5g56420 PE=2 SV=1 | 6.47E-17 | |
| TrEMBL | A0A3L6PPY8 | F-box domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM14G07980 PE=4 SV=1 | 5.87E-225 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | BH08.1029 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0725660.1 |
| Poaceae | Oryza coarctata | 1 | Oco16G005360 |
| Poaceae | Oryza sativa | 4 | LOC_Os08g09700.1, LOC_Os08g18000.1, LOC_Os08g28940.1 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0402993 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC7AG056870, gene_TRIDC7AG056910 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G408500.3, TraesCS7B02G308200.1 ... |