Basic Information
Locus ID:
BH07.947
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ABC transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 9020103 | 9023621 | - | BH07.947 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 57,081.24 Da | 45.08 | 90.49 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03263 | ABC_subfamily_A | 217 | 408 | 1.19788E-82 | - |
| Pfam | PF00005 | ABC transporter | 239 | 272 | 2.9E-7 | IPR003439 |
| Pfam | PF13304 | AAA domain, putative AbiEii toxin, Type IV TA system | 321 | 380 | 4.4E-8 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 212 | 413 | 1.31E-42 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 271 | 477 | 8.1E-36 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 176 | 270 | 5.2E-11 | IPR027417 |
| SMART | SM00382 | AAA_5 | 247 | 396 | 3.8E-8 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 217 | 420 | 16.013212 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 322 | 336 | - | IPR017871 |
| Coils | Coil | Coil | 173 | 193 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47780.1 | ABC2 homolog 6. member of ATH subfamily | 1.88E-165 |
| RefSeq | XP_025798895.1 | ABC transporter A family member 8-like isoform X1 [Panicum hallii] | 3.3E-272 |
| Q9STT5 | ABC transporter A family member 7 OS=Arabidopsis thaliana OX=3702 GN=ABCA7 PE=3 SV=2 | 1.82E-164 | |
| TrEMBL | A0A8T0X1Q5 | ABC transporter domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_1NG542900 PE=3 SV=1 | 1.09E-272 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg18622, jg25768 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_19610, gene_19611, gene_20853, gene_22580 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah000931, Ah037781, Ah037794 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g208010 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg31171, Sbi_jg41577, Sbi_jg48508, Sbi_jg58102 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg25720, Seu_jg27815 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00004591, GOSA_00004593, GOSA_00024839 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl54655, Sgl54658, Sgl59995, Sgl59998, Sgl78564, Sgl78565 ... |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000005498, gene:ENSEOMG00000018178 ... |
| Amaranthaceae | Chenopodium quinoa | 8 | CQ.Regalona.r1.5AG0021090, CQ.Regalona.r1.5AG0021110 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30137500, pistato.v30137520 |
| Apiaceae | Apium graveolens | 2 | Ag4G00339, Ag4G00340 |
| Arecaceae | Cocos nucifera | 5 | COCNU_03G015800, COCNU_03G015810, COCNU_06G000210 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103696456, gene-LOC103709774, gene-LOC103709796 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.590.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G33296 |
| Brassicaceae | Arabidopsis thaliana | 8 | AT3G47740.1, AT3G47750.1, AT3G47760.1, AT3G47770.1 ... |
| Brassicaceae | Eutrema salsugineum | 7 | Thhalv10003645m.g.v1.0, Thhalv10010102m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 6 | Sp2g24900.v2.2, Sp2g24940.v2.2, Sp5g14170.v2.2 ... |
| Brassicaceae | Brassica nigra | 7 | BniB02g075570.2N, BniB02g075620.2N, BniB04g019130.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G1802, Ceq04G1803 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl04G1978, Cgl04G1980, Cgl04G1981 |
| Cymodoceaceae | Cymodocea nodosa | 4 | gene.Cymno12g00690, gene.Cymno16g00840, gene.Cymno16g00850 ... |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0227s00010.v1.0, Dusal.0282s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 5 | gene.Thate03g19250, gene.Thate09g13950, gene.Thate09g13960 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11569 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.908 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00028944, Pov_00031929 |
| Plumbaginaceae | Limonium bicolor | 6 | Lb0G37348, Lb2G11367, Lb5G27144, Lb5G27146, Lb6G31855 ... |
| Poaceae | Echinochloa crus-galli | 23 | AH03.1682, AH06.2139, AH07.816, AH07.818, AH08.1373 ... |
| Poaceae | Eleusine coracana subsp. coracana | 9 | gene-QOZ80_2AG0105930, gene-QOZ80_2BG0159360 ... |
| Poaceae | Hordeum vulgare | 6 | HORVU.MOREX.r3.1HG0076580.1, HORVU.MOREX.r3.1HG0076590.1 ... |
| Poaceae | Lolium multiflorum | 10 | gene-QYE76_004596, gene-QYE76_004711, gene-QYE76_004712 ... |
| Poaceae | Oryza coarctata | 9 | Oco04G005680, Oco04G005710, Oco11G011830, Oco12G012000 ... |
| Poaceae | Oryza sativa | 5 | LOC_Os02g01820.1, LOC_Os02g11960.1, LOC_Os06g38950.1 ... |
| Poaceae | Paspalum vaginatum | 7 | gene-BS78_02G161800, gene-BS78_04G083100 ... |
| Poaceae | Puccinellia tenuiflora | 9 | Pt_Chr0202035, Pt_Chr0205358, Pt_Chr0205435, Pt_Chr0302873 ... |
| Poaceae | Sporobolus alterniflorus | 11 | Chr10G011570, Chr10G017160, Chr11G005330, Chr11G010730 ... |
| Poaceae | Thinopyrum elongatum | 7 | Tel1E01G557200, Tel1E01G557300, Tel1E01G557400 ... |
| Poaceae | Triticum dicoccoides | 12 | gene_TRIDC1AG050650, gene_TRIDC1AG050680 ... |
| Poaceae | Triticum aestivum | 19 | TraesCS1A02G343000.1, TraesCS1A02G343200.1 ... |
| Poaceae | Zea mays | 7 | Zm00001eb178670_P002, Zm00001eb178680_P001 ... |
| Poaceae | Zoysia japonica | 6 | nbis-gene-10146, nbis-gene-16852, nbis-gene-16855 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g12433, Zma_g24028, Zma_g32528 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG01.2605, evm.TU.LG02.2616, evm.TU.LG14.1739 ... |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc08g14930, gene.Posoc09g10840, gene.Posoc09g10850 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.559 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28811 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15570 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1782 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.361 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000269 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14543 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1537 |
| Salicaceae | Populus euphratica | 3 | populus_peu28516, populus_peu29872, populus_peu29883 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132600756, gene-LOC132600770, gene-LOC132632661 ... |
| Solanaceae | Solanum chilense | 4 | SOLCI003427800, SOLCI003428100, SOLCI004866300 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107014648, gene-LOC107014649, gene-LOC107021653 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_11570, gene_2305 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0660 |
| Zosteraceae | Zostera marina | 6 | Zosma01g05780.v3.1, Zosma01g37690.v3.1, Zosma04g03430.v3.1 ... |