Basic Information
Locus ID:
BH07.873
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
EBF1
Description:
Leucine-rich repeat - CC (cysteine-containing) subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 8211307 | 8213418 | - | BH07.873 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.25 | 68,133.44 Da | 39.77 | 104.82 | 0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 220 | 243 | 0.014 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 378 | 400 | 1.1 | IPR001611 |
| Pfam | PF00646 | F-box domain | 63 | 103 | 5.7E-4 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 272 | 294 | 0.48 | IPR001611 |
| SUPERFAMILY | SSF81383 | F-box domain | 59 | 99 | 8.9E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 185 | 645 | 4.32E-41 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 300 | 427 | 1.02E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 558 | 648 | 7.4E-15 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 431 | 551 | 9.4E-18 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 142 | 407 | 6.3E-50 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 165 | 193 | 560.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 538 | 563 | 0.005 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 220 | 245 | 2.6E-7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 194 | 219 | 0.4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 564 | 588 | 1.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 458 | 483 | 36.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 246 | 271 | 0.26 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 511 | 536 | 1.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 404 | 429 | 530.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 484 | 509 | 0.063 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 272 | 297 | 0.0079 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 378 | 403 | 0.0036 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 590 | 615 | 84.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 352 | 377 | 9.2 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25490.1 | EIN3-binding F box protein 1. Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. | 2.81E-98 |
| RefSeq | XP_004951542.1 | EIN3-binding F-box protein 1 [Setaria italica] | 9.76E-293 |
| Q9SKK0 | EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1 | 2.72E-97 | |
| TrEMBL | A0A1E5VY32 | EIN3-binding F-box protein 1 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0008956 PE=4 SV=1 | 3.52E-294 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology