Basic Information
Locus ID:
BH07.760
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 7221224 | 7227718 | - | BH07.760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 95,395.50 Da | 39.91 | 87.10 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 484 | 781 | 4.69439E-153 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 165 | 463 | 4.99278E-167 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 489 | 777 | 2.3E-20 | IPR030395 |
| Pfam | PF01894 | Uncharacterised protein family UPF0047 | 22 | 122 | 1.2E-30 | IPR001602 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 164 | 462 | 7.33E-38 | IPR017946 |
| SUPERFAMILY | SSF111038 | YjbQ-like | 5 | 122 | 3.01E-37 | IPR035917 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 483 | 781 | 7.06E-44 | IPR017946 |
| Gene3D | G3DSA:2.60.120.460 | - | 1 | 123 | 1.2E-39 | IPR035917 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 164 | 463 | 6.0E-32 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 482 | 782 | 5.7E-47 | IPR017946 |
| TIGRFAM | TIGR00149 | TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme | 7 | 122 | 1.2E-31 | IPR001602 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 484 | 782 | 30.577925 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 165 | 464 | 24.073725 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58170.1 | SHV3-like 5. | 4.73E-269 |
| RefSeq | XP_039788508.1 | glycerophosphodiester phosphodiesterase GDPDL7-like [Panicum virgatum] | 0 |
| Q9LVN0 | Glycerophosphodiester phosphodiesterase GDPDL7 OS=Arabidopsis thaliana OX=3702 GN=GDPDL7 PE=2 SV=1 | 4.54E-268 | |
| TrEMBL | A0A3L6RNY7 | glycerophosphodiester phosphodiesterase OS=Panicum miliaceum OX=4540 GN=C2845_PM11G00610 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology