Basic Information
Locus ID:
BH07.722
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin fusion degradation protein UFD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 6963211 | 6970752 | + | BH07.722 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 97,567.78 Da | 59.10 | 61.69 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 602 | 773 | 3.6E-79 | IPR004854 |
| SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 458 | 523 | 6.67E-11 | - |
| Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 447 | 458 | 4.6E-15 | - |
| Gene3D | G3DSA:3.10.330.10 | - | 698 | 771 | 3.8E-34 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 595 | 696 | 7.4E-43 | IPR042299 |
| Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 459 | 520 | 4.6E-15 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 779 | 900 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 297 | 315 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 315 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 410 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 869 | 890 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 830 | 863 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 410 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 103 | - | - |
| Coils | Coil | Coil | 311 | 357 | - | - |
| Coils | Coil | Coil | 137 | 164 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.3 | ubiquitin fusion degradation 1. | 2.11E-137 |
| RefSeq | XP_034569212.1 | ubiquitin fusion degradation protein 1 homolog [Setaria viridis] | 1.01E-226 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 2.54E-68 | |
| TrEMBL | A0A368PHD7 | Ubiquitin fusion degradation protein 1 homolog OS=Setaria italica OX=4555 GN=SETIT_1G061900v2 PE=3 SV=1 | 6.5E-225 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology