Basic Information
Locus ID:
BH07.549
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Domain in cystathionine beta-synthase and other proteins.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 5445155 | 5446664 | + | BH07.549 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 47,086.94 Da | 37.85 | 98.12 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00571 | CBS domain | 382 | 429 | 2.3E-9 | IPR000644 |
| SUPERFAMILY | SSF54631 | CBS-domain pair | 220 | 430 | 7.79E-19 | - |
| SUPERFAMILY | SSF54631 | CBS-domain pair | 51 | 197 | 4.84E-10 | - |
| Gene3D | G3DSA:3.10.580.10 | - | 37 | 235 | 5.3E-10 | - |
| Gene3D | G3DSA:3.10.580.10 | - | 250 | 444 | 2.1E-16 | - |
| SMART | SM00116 | cbs_1 | 254 | 316 | 26.0 | IPR000644 |
| SMART | SM00116 | cbs_1 | 382 | 430 | 3.2E-8 | IPR000644 |
| ProSiteProfiles | PS51371 | CBS domain profile. | 379 | 436 | 11.365666 | IPR000644 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
KEGG Pathway
Pathway:
ko04068 (FoxO signaling pathway)
map04068 (FoxO signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04211 (Longevity regulating pathway)
map04211 (Longevity regulating pathway)
ko04213 (Longevity regulating pathway - multiple species)
map04213 (Longevity regulating pathway - multiple species)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15330.1 | Cystathionine beta-synthase (CBS) protein. | 3.4E-106 |
| RefSeq | XP_025798775.1 | SNF1-related protein kinase regulatory subunit gamma-like PV42a [Panicum hallii] | 4.7E-250 |
| Q9XI37 | SNF1-related protein kinase regulatory subunit gamma-like PV42a OS=Arabidopsis thaliana OX=3702 GN=PV42A PE=2 SV=1 | 3.28E-105 | |
| TrEMBL | A0A1E5VBK2 | SNF1-related protein kinase regulatory subunit gamma-like PV42a OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0016446 PE=4 SV=1 | 8.83E-249 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18248 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21400 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010557 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g219480 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11579, Sbi_jg46520 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20832 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005160, GOSA_00005161 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl56389, Sgl61920 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018961, gene:ENSEOMG00000038810 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0009790, CQ.Regalona.r1.9AG0014840 |
| Apiaceae | Apium graveolens | 5 | Ag5G01567, Ag9G01173, Ag9G01176, AgUnG01435, AgUnG01437 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G000070 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710138 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1583.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G01751 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G15330.1, AT1G80090.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008048m.g.v1.0, Thhalv10019455m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g13650.v2.2, Sp5g35710.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g040650.2N, BniB06g068750.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0324 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0338 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.489 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027744 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb7G34090, Lb7G34356 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.424, BH07.549, CH07.411 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0102130, gene-QOZ80_2BG0155470 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0564660.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G002840, Oco04G002820 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g06410.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G043900, gene-BS78_K002300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0202563, Pt_Chr0202581 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G258400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG017850, gene_TRIDC6BG023620 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G132700.1, TraesCS6B02G160900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb232620_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-33705, nbis-gene-33706 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12214 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG06.1255, evm.TU.LG07.1779, evm.TU.LG11.603 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3652 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11576 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21762 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.331 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004095 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16326 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21393 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598778 |
| Solanaceae | Solanum chilense | 1 | SOLCI003611400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107022738 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10150 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2212 |
| Zosteraceae | Zostera marina | 1 | Zosma06g25850.v3.1 |