Basic Information
Locus ID:
BH07.530
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 5262465 | 5274885 | - | BH07.530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 189,738.94 Da | 56.21 | 79.54 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08387 | FBD | 383 | 425 | 8.8E-8 | IPR006566 |
| Pfam | PF00098 | Zinc knuckle | 1097 | 1114 | 1.8E-4 | IPR001878 |
| Pfam | PF00646 | F-box domain | 25 | 62 | 1.8E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 25 | 69 | 7.19E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 135 | 336 | 4.0E-10 | - |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 1087 | 1116 | 1.03E-5 | IPR036875 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 1020 | 1060 | 2.09E-5 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 1028 | 1121 | 6.9E-9 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 110 | 369 | 4.5E-10 | IPR032675 |
| SMART | SM00343 | c2hcfinal6 | 1038 | 1054 | 0.061 | IPR001878 |
| SMART | SM00256 | fbox_2 | 28 | 68 | 0.0024 | IPR001810 |
| SMART | SM00343 | c2hcfinal6 | 1098 | 1114 | 0.0049 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 1099 | 1114 | 9.735132 | IPR001878 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 22 | 72 | 9.153042 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1472 | 1495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1176 | 1237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1470 | 1499 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1176 | 1192 | - | - |
| Coils | Coil | Coil | 940 | 967 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13570.2 | - | 2.42E-17 |
| RefSeq | XP_037486332.1 | putative F-box/LRR-repeat protein At3g28410 [Triticum dicoccoides] | 2.34E-168 |
| Q9FZ70 | F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana OX=3702 GN=At1g13570 PE=2 SV=1 | 7.96E-16 | |
| TrEMBL | A0A0A9F0D8 | F-box domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 2.75E-237 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 11 | AH03.1681, BH02.1694, BH03.321, BH04.871, BH07.2625 ... |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_3AG0221350, gene-QOZ80_3BG0267940 ... |
| Poaceae | Oryza coarctata | 4 | Oco03G007240, Oco10G013850, Oco11G010490, Oco19G003500 |
| Poaceae | Paspalum vaginatum | 6 | gene-BS78_06G044000, gene-BS78_08G060500, gene-BS78_K024200 ... |
| Poaceae | Sporobolus alterniflorus | 9 | Chr01G030640, Chr01G034250, Chr03G009660, Chr05G004500 ... |
| Poaceae | Zea mays | 1 | Zm00001eb384270_P001 |
| Poaceae | Zoysia japonica | 11 | nbis-gene-1295, nbis-gene-27399, nbis-gene-33913 ... |