Basic Information
Locus ID:
BH07.499
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Universal stress protein family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 4881759 | 4887487 | + | BH07.499 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 120,715.46 Da | 56.74 | 75.42 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03527 | RuBisCO_small | 961 | 1070 | 1.71123E-49 | IPR000894 |
| CDD | cd01989 | STK_N | 43 | 194 | 6.78966E-55 | - |
| CDD | cd14066 | STKc_IRAK | 546 | 800 | 3.13267E-82 | - |
| Pfam | PF00582 | Universal stress protein family | 46 | 169 | 6.4E-10 | IPR006016 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 545 | 800 | 6.3E-39 | IPR001245 |
| Pfam | PF00101 | Ribulose bisphosphate carboxylase, small chain | 963 | 1071 | 3.8E-33 | IPR000894 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 45 | 169 | 1.34E-11 | - |
| SUPERFAMILY | SSF55239 | RuBisCO, small subunit | 952 | 1073 | 2.88E-45 | IPR036385 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 523 | 808 | 2.97E-67 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 521 | 612 | 1.6E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 613 | 812 | 1.6E-46 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 43 | 192 | 6.8E-13 | IPR014729 |
| Gene3D | G3DSA:3.30.190.10 | Ribulose bisphosphate carboxylase, small subunit | 952 | 1077 | 4.0E-49 | IPR036385 |
| SMART | SM00220 | serkin_6 | 540 | 811 | 5.4E-32 | IPR000719 |
| SMART | SM00961 | RuBisCO_small_2_a | 962 | 1071 | 4.2E-34 | IPR000894 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 540 | 811 | 35.707443 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 658 | 670 | - | IPR008271 |
| PRINTS | PR00152 | RuBisCO small subunit signature | 990 | 1005 | 6.8E-34 | IPR024681 |
| PRINTS | PR00152 | RuBisCO small subunit signature | 940 | 958 | 6.8E-34 | IPR024681 |
| PRINTS | PR00152 | RuBisCO small subunit signature | 1045 | 1071 | 6.8E-34 | IPR024681 |
| PRINTS | PR00152 | RuBisCO small subunit signature | 1011 | 1040 | 6.8E-34 | IPR024681 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 291 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G78940.3 | - | 6.15E-148 |
| RefSeq | XP_034581933.1 | U-box domain-containing protein 52-like isoform X1 [Setaria viridis] | 0 |
| Q9FKG6 | U-box domain-containing protein 52 OS=Arabidopsis thaliana OX=3702 GN=PUB52 PE=2 SV=1 | 1.26E-106 | |
| TrEMBL | A0A811PXM4 | Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Miscanthus lutarioriparius OX=422564 GN=RBCS PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_13G001910 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.388, BH07.499, CH03.4432 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0101760, gene-QOZ80_2BG0155160 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0560490.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_020520 |
| Poaceae | Oryza coarctata | 1 | Oco04G002580 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g05820.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G039900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202696 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G272700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG016320, gene_TRIDC6BG021960 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G122700.2, TraesCS6B02G150900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb207960_P003 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12201 |