halophFGD

Basic Information

Locus ID: BH07.413

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Cullin family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
BH07	4103115	4103871	-	BH07.413

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.42	24,922.38 Da	58.97	80.18	-0.37

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00888	Cullin family	49	207	1.0E-25	IPR001373
SUPERFAMILY	SSF74788	Cullin repeat-like	42	205	6.8E-29	IPR016159
Gene3D	G3DSA:1.20.1310.10	Cullin Repeats	34	164	8.0E-28	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	29	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	7	22	-	-

Gene Ontology

Biological Process:

GO:0006511 (ubiquitin-dependent protein catabolic process)

Molecular Function:

GO:0031625 (ubiquitin protein ligase binding)

KEGG Pathway

KO Term:

K03869 (cullin 3)

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis) ko04340 (Hedgehog signaling pathway) map04340 (Hedgehog signaling pathway) ko04341 (Hedgehog signaling pathway - fly) map04341 (Hedgehog signaling pathway - fly)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT1G69670.1	cullin 3B. cullin, putative, contains similarity to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with members of AtBPM family and RBX1 suggesting it is part of an E3 ligase complex involved in RUB modification.	1.65E-36
RefSeq	XP_039774606.1	cullin-3B-like isoform X2 [Panicum virgatum]	8.05E-78
Swiss-Prot	Q9C9L0	Cullin-3B OS=Arabidopsis thaliana OX=3702 GN=CUL3B PE=1 SV=1	1.64E-35
TrEMBL	A0A8T0XK62	Cullin domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_1KG058900 PE=3 SV=1	2.53E-76

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	7	AH07.316, AH07.318, AH07.319, BH07.413, CH03.4503, CH03.4504 ... CH03.4505
Poaceae	Lolium multiflorum	2	gene-QYE76_046640, gene-QYE76_046668
Poaceae	Oryza sativa	1	LOC_Os04g55000.1