Basic Information
Locus ID:
BH07.4003
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
EBF1
Description:
Leucine Rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 45153548 | 45156906 | + | BH07.4003 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 86,583.08 Da | 49.22 | 91.31 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 392 | 414 | 0.16 | IPR001611 |
| SUPERFAMILY | SSF81383 | F-box domain | 231 | 272 | 2.35E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 356 | 595 | 1.46E-21 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 516 | 763 | 4.19E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 623 | 819 | 1.1E-33 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 432 | 622 | 1.6E-26 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 342 | 431 | 9.9E-22 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 336 | 364 | 300.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 549 | 574 | 27.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 761 | 786 | 300.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 391 | 416 | 9.3E-7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 365 | 390 | 0.026 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 735 | 759 | 8.5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 682 | 707 | 1.2 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 655 | 680 | 0.023 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 629 | 654 | 4.7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 709 | 734 | 0.0034 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 443 | 468 | 2.5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 417 | 442 | 1.2 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 523 | 548 | 39.0 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 135 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25490.1 | EIN3-binding F box protein 1. Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. | 5.9E-88 |
| RefSeq | XP_004965933.1 | EIN3-binding F-box protein 1 [Setaria italica] | 1.53E-272 |
| Q9SKK0 | EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1 | 5.73E-87 | |
| TrEMBL | A0A835AM79 | F-box domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_058790 PE=4 SV=1 | 1.33E-288 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology