Basic Information
Locus ID:
BH07.3947
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
source UniProtKB
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 44571575 | 44588232 | + | BH07.3947 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.40 | 300,960.38 Da | 56.71 | 70.16 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13963 | Transposase-associated domain | 523 | 596 | 5.6E-18 | IPR029480 |
| Pfam | PF13960 | Domain of unknown function (DUF4218) | 1237 | 1343 | 7.9E-38 | IPR025452 |
| Pfam | PF13952 | Domain of unknown function (DUF4216) | 1497 | 1562 | 9.1E-14 | IPR025312 |
| Pfam | PF02992 | Transposase family tnp2 | 840 | 1053 | 4.3E-91 | IPR004242 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1799 | 1845 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1902 | 1933 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2260 | 2283 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2413 | 2524 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 633 | 653 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1564 | 1585 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1761 | 1776 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2472 | 2520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1713 | 1727 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1812 | 1828 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1902 | 1924 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2432 | 2453 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2551 | 2586 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1698 | 1776 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 98 | - | - |
| Coils | Coil | Coil | 2218 | 2245 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039778865.1 | uncharacterized protein LOC120646298 [Panicum virgatum] | 0 |
| TrEMBL | Q2QQL4 | Transposon protein, putative, CACTA, En/Spm sub-class OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g30630 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |