Basic Information
Locus ID:
BH07.3890
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
E3 ubiquitin-protein ligase EL5
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 44073373 | 44074278 | - | BH07.3890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 30,931.35 Da | 42.40 | 74.05 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 117 | 160 | 9.95701E-20 | - |
| Pfam | PF13639 | Ring finger domain | 117 | 160 | 2.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 110 | 166 | 1.62E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 79 | 166 | 9.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 118 | 159 | 1.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 118 | 160 | 12.518784 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 301 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G35330.1 | RING/U-box superfamily protein. | 1.96E-20 |
| RefSeq | XP_025827852.1 | E3 ubiquitin-protein ligase EL5-like [Panicum hallii] | 4.1E-110 |
| Q9LRB7 | E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1 | 2.1E-49 | |
| TrEMBL | A0A3L6QJB0 | E3 ubiquitin-protein ligase EL5-like OS=Panicum miliaceum OX=4540 GN=C2845_PM12G17500 PE=4 SV=1 | 2.01E-105 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology