Basic Information
Locus ID:
BH07.387
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 3884798 | 3890661 | + | BH07.387 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 42,438.36 Da | 61.69 | 78.80 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 178 | 226 | 2.29767E-20 | - |
| Pfam | PF12906 | RING-variant domain | 178 | 225 | 3.2E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 175 | 229 | 1.41E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 162 | 237 | 3.4E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 177 | 226 | 7.1E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 170 | 232 | 20.788982 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 74 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50440.1 | RING/FYVE/PHD zinc finger superfamily protein. | 3.31E-107 |
| RefSeq | XP_004951989.1 | uncharacterized protein LOC101776116 isoform X1 [Setaria italica] | 4.85E-181 |
| Q8TCQ1 | E3 ubiquitin-protein ligase MARCHF1 OS=Homo sapiens OX=9606 GN=MARCHF1 PE=1 SV=1 | 3.84E-7 | |
| TrEMBL | K3YUR8 | RING-CH-type domain-containing protein OS=Setaria italica OX=4555 GN=101776116 PE=4 SV=1 | 1.1E-179 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology