Basic Information
Locus ID:
BH07.3856
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 43781898 | 43784768 | - | BH07.3856 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 46,029.40 Da | 41.94 | 96.49 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18045 | DEADc_EIF4AIII_DDX48 | 36 | 236 | 2.18497E-122 | - |
| CDD | cd18787 | SF2_C_DEAD | 247 | 377 | 2.95907E-63 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 59 | 221 | 1.2E-42 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 260 | 368 | 3.7E-31 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 70 | 112 | 1.04E-5 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 102 | 390 | 3.2E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 239 | 407 | 2.0E-60 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 20 | 238 | 4.1E-64 | IPR027417 |
| SMART | SM00490 | helicmild6 | 287 | 368 | 1.3E-34 | IPR001650 |
| SMART | SM00487 | ultradead3 | 53 | 250 | 2.8E-54 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 34 | 62 | 10.872815 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 65 | 235 | 25.347347 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 246 | 407 | 27.249672 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 181 | 189 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 7.77E-252 |
| RefSeq | XP_004954515.1 | eukaryotic initiation factor 4A-III homolog A [Setaria italica] | 8.95E-291 |
| Q5VNM3 | Eukaryotic initiation factor 4A-III homolog A OS=Oryza sativa subsp. japonica OX=39947 GN=EIF4A3A PE=1 SV=1 | 5.94E-279 | |
| TrEMBL | K3YSY1 | RNA helicase OS=Setaria italica OX=4555 GN=101758423 PE=3 SV=1 | 2.02E-289 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology