Basic Information
Locus ID:
BH07.3726
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 42773005 | 42783603 | - | BH07.3726 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 88,285.49 Da | 45.26 | 67.40 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 523 | 808 | 6.51609E-67 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 692 | 725 | 4.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 566 | 601 | 4.9E-5 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 35 | 1.5E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 776 | 808 | 0.059 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 609 | 645 | 4.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 521 | 808 | 1.12E-62 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 654 | 808 | 1.4E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 353 | 653 | 1.3E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 769 | 808 | 8.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 520 | 559 | 7.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 728 | 767 | 0.45 | IPR001680 |
| SMART | SM00320 | WD40_4 | 562 | 601 | 1.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 687 | 725 | 7.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 648 | 684 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 605 | 645 | 3.0E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 569 | 601 | 12.379869 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 612 | 646 | 8.597424 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.035233 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 612 | 654 | 10.575287 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 569 | 601 | 10.311051 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 527 | 568 | 8.536777 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 776 | 808 | 12.446495 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 694 | 734 | 9.40565 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 776 | 808 | 13.415834 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 435 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 435 | - | - |
| Coils | Coil | Coil | 365 | 392 | - | - |
| Coils | Coil | Coil | 79 | 99 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 5.089999999831E-314 |
| RefSeq | XP_025812642.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X1 [Panicum hallii] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 4.8999999999999E-311 | |
| TrEMBL | A0A3L6RPI7 | LisH domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM11G22180 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology