Basic Information
Locus ID:
BH07.3679
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 42169796 | 42171127 | + | BH07.3679 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 49,645.21 Da | 49.74 | 80.75 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 26 | 90 | 2.18E-7 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 19 | 68 | 2.7E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034577754.1 | uncharacterized protein LOC117841474 [Setaria viridis] | 1.56E-242 |
| TrEMBL | A0A4U6WKT7 | F-box domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_1G365100v2 PE=4 SV=1 | 3.52E-241 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH08.1207, BH07.3679, BH08.1175, CH07.3752, CH08.1300 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0469780.1 |
| Poaceae | Oryza coarctata | 2 | Oco18G000850, Oco19G001450 |
| Poaceae | Oryza sativa | 3 | LOC_Os06g16730.1, LOC_Os10g10390.1, LOC_Os10g10410.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_07G059500, gene-BS78_07G060200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0705290 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G282900 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5AG027470 |
| Poaceae | Triticum aestivum | 1 | TraesCS5A02G166500.1.cds1 |