Basic Information
Locus ID:
BH07.3271
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 38871379 | 38873435 | + | BH07.3271 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.91 | 66,370.84 Da | 54.98 | 77.28 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 377 | 420 | 9.53719E-18 | - |
| Pfam | PF13639 | Ring finger domain | 377 | 420 | 7.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 356 | 426 | 7.07E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 339 | 424 | 7.4E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 378 | 419 | 9.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 378 | 420 | 12.474524 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 139 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 3.89E-101 |
| RefSeq | XP_025796646.1 | RING-H2 finger protein ATL46-like [Panicum hallii] | 4.04E-253 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 3.74E-100 | |
| TrEMBL | A0A3L6RT23 | RING-H2 finger protein ATL46-like OS=Panicum miliaceum OX=4540 GN=C2845_PM11G25920 PE=4 SV=1 | 6.65E-261 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology