Basic Information
Locus ID:
BH07.3233
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 38475779 | 38477149 | - | BH07.3233 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 48,504.83 Da | 50.69 | 98.79 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 49 | 90 | 9.97032E-21 | - |
| Pfam | PF04564 | U-box domain | 45 | 116 | 1.3E-19 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 219 | 444 | 7.85E-20 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 42 | 120 | 2.74E-28 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 43 | 118 | 4.1E-28 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 124 | 448 | 1.4E-20 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 48 | 111 | 2.7E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 44 | 118 | 32.032043 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 8.49E-80 |
| RefSeq | XP_039791383.1 | U-box domain-containing protein 21-like [Panicum virgatum] | 3.24E-253 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 8.22E-79 | |
| TrEMBL | A0A2T7FBR8 | RING-type E3 ubiquitin transferase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G378400 PE=4 SV=1 | 7.06E-252 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology