Basic Information
Locus ID:
BH07.3220
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
RdRP
Description:
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 38332740 | 38345784 | + | BH07.3220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 310,163.75 Da | 35.64 | 83.96 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 1113 | 1353 | 2.02745E-45 | - |
| Pfam | PF14111 | Domain of unknown function (DUF4283) | 213 | 340 | 8.8E-10 | IPR025558 |
| Pfam | PF05183 | RNA dependent RNA polymerase | 2051 | 2610 | 1.4E-184 | IPR007855 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1127 | 1353 | 1.4E-25 | IPR000477 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1044 | 1326 | 3.56E-25 | IPR043502 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 1099 | 1353 | 14.000367 | IPR000477 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 770 | 795 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 431 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 416 | 431 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 773 | 795 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 593 | 620 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 415 | - | - |
| Coils | Coil | Coil | 937 | 961 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14790.1 | RNA-dependent RNA polymerase 1. Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs. | 0 |
| RefSeq | XP_039772976.1 | probable RNA-dependent RNA polymerase 1 [Panicum virgatum] | 0 |
| Q0DXS3 | Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8T0XIQ1 | RNA-dependent RNA polymerase OS=Panicum virgatum OX=38727 GN=PVAP13_1KG502600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology