Basic Information
Locus ID:
BH07.3219
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Microtubule-associated protein 70
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 38301243 | 38328447 | + | BH07.3219 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.33 | 382,511.47 Da | 45.84 | 82.46 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 1207 | 1293 | 6.64317E-19 | - |
| CDD | cd01647 | RT_LTR | 1428 | 1604 | 2.33307E-95 | - |
| CDD | cd09274 | RNase_HI_RT_Ty3 | 1697 | 1811 | 1.55177E-47 | - |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 1666 | 1760 | 5.0E-30 | IPR041577 |
| Pfam | PF03732 | Retrotransposon gag protein | 961 | 1053 | 2.3E-8 | IPR005162 |
| Pfam | PF08284 | Retroviral aspartyl protease | 1197 | 1300 | 1.7E-8 | - |
| Pfam | PF05183 | RNA dependent RNA polymerase | 3133 | 3226 | 1.6E-21 | IPR007855 |
| Pfam | PF05183 | RNA dependent RNA polymerase | 2777 | 3132 | 8.7E-103 | IPR007855 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1445 | 1604 | 4.9E-32 | IPR000477 |
| Pfam | PF00665 | Integrase core domain | 1955 | 2047 | 9.7E-10 | IPR001584 |
| Pfam | PF07058 | Microtubule-associated protein 70 | 31 | 580 | 1.9E-290 | IPR009768 |
| Pfam | PF17921 | Integrase zinc binding domain | 1877 | 1933 | 2.0E-15 | IPR041588 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1369 | 1797 | 1.22E-164 | IPR043502 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1944 | 2101 | 3.79E-45 | IPR012337 |
| SUPERFAMILY | SSF50630 | Acid proteases | 1198 | 1296 | 3.04E-8 | IPR021109 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 1390 | 1529 | 1.8E-92 | - |
| Gene3D | G3DSA:1.10.340.70 | - | 1845 | 1932 | 4.7E-14 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 1614 | 1698 | 6.5E-27 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 1469 | 1604 | 1.8E-92 | IPR043128 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 1200 | 1321 | 1.2E-13 | IPR021109 |
| Gene3D | G3DSA:3.30.420.10 | - | 1942 | 2142 | 9.4E-57 | IPR036397 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 1942 | 2106 | 22.8344 | IPR001584 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 1425 | 1604 | 19.104618 | IPR000477 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 900 | 915 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 874 | 919 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 435 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1091 | 1119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 564 | 593 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 571 | 587 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1091 | 1117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 780 | 809 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 874 | 899 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 455 | 480 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 355 | 389 | - | - |
| Coils | Coil | Coil | 514 | 566 | - | - |
| Coils | Coil | Coil | 261 | 288 | - | - |
| Coils | Coil | Coil | 47 | 67 | - | - |
| Coils | Coil | Coil | 150 | 187 | - | - |
| Coils | Coil | Coil | 75 | 123 | - | - |
| Coils | Coil | Coil | 202 | 250 | - | - |
| Coils | Coil | Coil | 2127 | 2147 | - | - |
| Coils | Coil | Coil | 310 | 344 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14790.1 | RNA-dependent RNA polymerase 1. Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs. | 0 |
| RefSeq | XP_039772976.1 | probable RNA-dependent RNA polymerase 1 [Panicum virgatum] | 0 |
| Q9LQV2 | RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6QGH7 | RNA-dependent RNA polymerase OS=Panicum miliaceum OX=4540 GN=C2845_PM12G26440 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology