Basic Information
Locus ID:
BH07.3213
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin conjugation factor E4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 38258452 | 38260420 | + | BH07.3213 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 11,694.26 Da | 11.79 | 78.19 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 23 | 46 | 4.6E-6 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 15 | 46 | 4.59E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 65 | 2.6E-5 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 83 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15400.1 | U-box domain-containing protein. | 5.57E-14 |
| RefSeq | XP_025795563.1 | probable ubiquitin conjugation factor E4 isoform X2 [Panicum hallii] | 2.13E-15 |
| Q9LF41 | Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana OX=3702 GN=PUB1 PE=2 SV=1 | 5.53E-13 | |
| TrEMBL | A0A8T0MS67 | U-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9NG516100 PE=3 SV=1 | 4.67E-14 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_13G006030 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0360 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0318 |
| Poaceae | Echinochloa crus-galli | 6 | BH01.2372, BH04.1573, BH05.2523, BH06.661, BH07.3213 ... |