Basic Information
Locus ID:
BH07.3172
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
NAC domain transcription factor superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 37981846 | 37987396 | - | BH07.3172 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 58,374.93 Da | 45.71 | 58.01 | -0.88 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02365 | No apical meristem (NAM) protein | 47 | 185 | 7.1E-20 | IPR003441 |
| SUPERFAMILY | SSF101941 | NAC domain | 31 | 204 | 2.09E-35 | IPR036093 |
| Gene3D | G3DSA:2.170.150.80 | NAC domain | 55 | 209 | 2.4E-28 | IPR036093 |
| ProSiteProfiles | PS51005 | NAC domain profile. | 46 | 204 | 29.895088 | IPR003441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 295 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G25580.1 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein. Encodes suppressor of gamma response 1 (SOG1), a putative transcription factor governing multiple responses to DNA damage. | 4.24E-116 |
| RefSeq | XP_039791333.1 | SUPPRESSOR OF GAMMA RESPONSE 1-like [Panicum virgatum] | 2.16E-252 |
| Q6NQK2 | SUPPRESSOR OF GAMMA RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=SOG1 PE=1 SV=1 | 4.08E-115 | |
| TrEMBL | A0A3L6QCI3 | NAC domain-containing protein 8-like OS=Panicum miliaceum OX=4540 GN=C2845_PM12G26770 PE=4 SV=1 | 5.49E-254 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology