Basic Information
Locus ID:
BH07.3085
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 37212831 | 37213814 | - | BH07.3085 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.91 | 25,657.25 Da | 65.96 | 80.13 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 18 | 132 | 1.77271E-34 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 12 | 130 | 1.2E-27 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 8 | 139 | 3.25E-35 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 6 | 144 | 6.7E-36 | IPR016135 |
| SMART | SM00212 | ubc_7 | 18 | 137 | 4.9E-28 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 137 | 26.325348 | IPR000608 |
KEGG Pathway
Pathway:
ko04013 (MAPK signaling pathway - fly)
map04013 (MAPK signaling pathway - fly)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04624 (Toll and Imd signaling pathway)
map04624 (Toll and Imd signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32790.1 | Ubiquitin-conjugating enzyme family protein. | 3.52E-24 |
| RefSeq | XP_025822762.1 | ubiquitin-conjugating enzyme E2 11-like [Panicum hallii] | 1.18E-61 |
| Q96LR5 | Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens OX=9606 GN=UBE2E2 PE=1 SV=1 | 2.05E-24 | |
| TrEMBL | A0A3L6RVX2 | UBC core domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM11G28100 PE=4 SV=1 | 3.05E-87 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||