Basic Information
Locus ID:
BH07.3084
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin-conjugating enzyme E2, catalytic domain homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 37207906 | 37208659 | - | BH07.3084 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.54 | 23,503.63 Da | 59.52 | 71.11 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 26 | 167 | 2.52377E-51 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 28 | 168 | 2.3E-40 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 13 | 175 | 1.25E-45 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 17 | 184 | 8.3E-47 | IPR016135 |
| SMART | SM00212 | ubc_7 | 27 | 175 | 1.6E-48 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 24 | 175 | 44.679943 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 98 | 114 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 190 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 180 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
KEGG Pathway
Pathway:
ko04013 (MAPK signaling pathway - fly)
map04013 (MAPK signaling pathway - fly)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04624 (Toll and Imd signaling pathway)
map04624 (Toll and Imd signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G08690.1 | ubiquitin-conjugating enzyme 11. | 6.31E-38 |
| RefSeq | XP_039791887.1 | ubiquitin-conjugating enzyme E2 28-like [Panicum virgatum] | 1.2E-101 |
| P35134 | Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana OX=3702 GN=UBC11 PE=1 SV=2 | 6.09E-37 | |
| TrEMBL | A0A8T0XSI0 | UBC core domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_1KG484700 PE=3 SV=1 | 2.72E-100 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||