Basic Information
Locus ID:
BH07.3065
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 37015597 | 37024739 | - | BH07.3065 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 135,425.23 Da | 44.29 | 70.56 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 1080 | 1157 | 5.82866E-6 | - |
| CDD | cd16521 | RING-HC_MKRN | 245 | 303 | 1.08797E-21 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 647 | 712 | 4.0E-6 | IPR005162 |
| Pfam | PF13639 | Ring finger domain | 244 | 303 | 3.8E-7 | IPR001841 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 36 | 58 | 4.45E-5 | IPR036855 |
| SUPERFAMILY | SSF57850 | RING/U-box | 231 | 309 | 6.06E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 230 | 317 | 6.2E-10 | IPR013083 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 1061 | 1170 | 6.5E-9 | IPR021109 |
| Gene3D | G3DSA:4.10.1000.10 | - | 30 | 101 | 5.4E-11 | - |
| SMART | SM00356 | c3hfinal6 | 332 | 360 | 0.028 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 34 | 59 | 0.39 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 63 | 87 | 0.01 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 177 | 202 | 1.1 | IPR000571 |
| SMART | SM00184 | ring_2 | 245 | 302 | 9.3E-7 | IPR001841 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 176 | 203 | 10.671277 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 61 | 88 | 13.732123 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 38 | 60 | 12.821381 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 332 | 361 | 14.201578 | IPR000571 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 245 | 303 | 12.297489 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 269 | 278 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 962 | 1016 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 989 | 1011 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 963 | 979 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 498 | 525 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G08505.1 | zinc finger (CCCH-type/C3HC4-type RING finger) family protein. | 4.45E-112 |
| RefSeq | XP_025798940.1 | E3 ubiquitin-protein ligase makorin-like isoform X1 [Panicum hallii] | 2.61E-233 |
| Q5ZA07 | E3 ubiquitin-protein ligase makorin OS=Oryza sativa subsp. japonica OX=39947 GN=MKRN PE=2 SV=1 | 1.85E-139 | |
| TrEMBL | A0A2S3GSP7 | RING-type E3 ubiquitin transferase OS=Panicum hallii OX=206008 GN=PAHAL_1G373600 PE=4 SV=1 | 5.91E-232 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 30 | AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053643, gene-QYE76_056610 |