Basic Information
Locus ID:
BH07.2953
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 36077125 | 36083318 | - | BH07.2953 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 80,895.99 Da | 50.90 | 71.88 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 423 | 706 | 2.12967E-43 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 583 | 621 | 0.0097 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 671 | 706 | 0.0012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 532 | 567 | 1.0E-6 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 450 | 508 | 2.3E-5 | IPR024977 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 198 | 708 | 1.33E-61 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 359 | 709 | 3.9E-125 | IPR015943 |
| SMART | SM00320 | WD40_4 | 667 | 706 | 8.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 579 | 621 | 2.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 486 | 524 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 528 | 567 | 2.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 624 | 664 | 290.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 444 | 483 | 3.3E-4 | IPR001680 |
| ProSiteProfiles | PS50835 | Ig-like domain profile. | 185 | 272 | 6.560157 | IPR007110 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 674 | 707 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 535 | 576 | 14.719144 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 451 | 488 | 8.518333 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 451 | 492 | 11.64467 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 535 | 569 | 11.708317 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 674 | 707 | 10.574686 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 554 | 568 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 693 | 707 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 304 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 3.28E-229 |
| RefSeq | XP_025808881.1 | cell division cycle 20.2, cofactor of APC complex-like [Panicum hallii] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 3.15E-228 | |
| TrEMBL | A0A3L6QMD3 | Cell division cycle 20.2, cofactor of APC complex-like OS=Panicum miliaceum OX=4540 GN=C2845_PM12G24380 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology