Basic Information
Locus ID:
BH07.2910
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
nucleic acid binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 35756769 | 35758516 | - | BH07.2910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 42,687.91 Da | 39.29 | 66.17 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6 | 67 | 1.1E-6 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 3 | 78 | 1.76E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 73 | 2.4E-9 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 4 | 73 | 1.2E-6 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 3 | 77 | 11.212958 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 300 | 332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 394 | - | - |
| Coils | Coil | Coil | 312 | 332 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 3.13E-80 |
| RefSeq | XP_025803385.1 | binding partner of ACD11 1-like [Panicum hallii] | 1.59E-183 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 1.02E-58 | |
| TrEMBL | A0A3L6QJ58 | Binding partner of ACD11 1 OS=Panicum miliaceum OX=4540 GN=C2845_PM12G24060 PE=4 SV=1 | 1.21E-185 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology