Basic Information
Locus ID:
BH07.2896
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 35613237 | 35615374 | - | BH07.2896 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 63,213.31 Da | 33.30 | 89.38 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 45 | 206 | 8.98152E-91 | - |
| CDD | cd02005 | TPP_PDC_IPDC | 410 | 575 | 9.25043E-81 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 239 | 355 | 4.0E-20 | IPR012000 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 439 | 563 | 3.6E-12 | IPR011766 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 42 | 209 | 3.8E-34 | IPR012001 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 409 | 587 | 2.32E-37 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 234 | 378 | 2.09E-29 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 42 | 214 | 2.59E-43 | IPR029061 |
| Gene3D | G3DSA:3.40.50.1220 | - | 229 | 391 | 4.6E-39 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 40 | 215 | 4.6E-59 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 403 | 574 | 5.4E-51 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 37 | 587 | 5.8E-204 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_025808731.1 | pyruvate decarboxylase 1 [Panicum hallii] | 0 |
| P28516 | Pyruvate decarboxylase 1 OS=Zea mays OX=4577 GN=PDC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2S3HBA5 | pyruvate decarboxylase OS=Panicum hallii OX=206008 GN=PAHAL_3G244900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology