Basic Information
Locus ID:
BH07.2886
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 35492947 | 35494110 | - | BH07.2886 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 41,005.42 Da | 63.61 | 64.34 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 165 | 208 | 6.17565E-17 | - |
| Pfam | PF13639 | Ring finger domain | 165 | 208 | 3.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 150 | 214 | 4.04E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 141 | 214 | 9.4E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 166 | 207 | 2.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 166 | 208 | 12.607302 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 309 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 387 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 2.06E-59 |
| RefSeq | XP_004953511.1 | E3 ubiquitin-protein ligase Os04g0590900 [Setaria italica] | 2.6E-226 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 8.49E-142 | |
| TrEMBL | A0A1E5W2H8 | RING-type E3 ubiquitin transferase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0007398 PE=4 SV=1 | 5.52E-227 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology