Basic Information
Locus ID:
BH07.2816
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 34907973 | 34913221 | + | BH07.2816 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.32 | 54,474.11 Da | 34.08 | 68.24 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 141 | 174 | 1.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 262 | 295 | 0.033 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 300 | 334 | 0.019 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 137 | 420 | 3.72E-45 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 108 | 138 | 2.67E-5 | IPR036855 |
| Gene3D | G3DSA:2.130.10.10 | - | 133 | 424 | 8.4E-46 | IPR015943 |
| SMART | SM00320 | WD40_4 | 298 | 335 | 2.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 214 | 251 | 6.1 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 103 | 130 | 0.0047 | IPR000571 |
| SMART | SM00320 | WD40_4 | 177 | 212 | 400.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 29 | 53 | 0.11 | IPR000571 |
| SMART | SM00320 | WD40_4 | 135 | 174 | 2.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 339 | 382 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 258 | 295 | 0.0093 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 103 | 131 | 14.877594 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 28 | 54 | 10.098542 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 142 | 174 | 11.365591 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 265 | 304 | 11.143396 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 142 | 183 | 14.251289 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 282 | 296 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 161 | 175 | 4.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 282 | 296 | 4.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 322 | 336 | 4.2E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 3.23E-139 |
| RefSeq | XP_025806289.1 | zinc finger CCCH domain-containing protein 17-like [Panicum hallii] | 2.01E-274 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 2.62E-234 | |
| TrEMBL | A0A8T0XTQ7 | Zinc finger CCCH domain-containing protein 17 OS=Panicum virgatum OX=38727 GN=PVAP13_1KG446900 PE=4 SV=1 | 1.06E-278 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology