Basic Information
Locus ID:
BH07.2744
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 34288780 | 34294034 | + | BH07.2744 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 116,659.85 Da | 50.67 | 79.63 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 46 | 206 | 2.90477E-37 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 958 | 998 | 1.74711E-22 | - |
| Pfam | PF04564 | U-box domain | 955 | 1024 | 2.6E-14 | IPR003613 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 674 | 873 | 5.8E-25 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 643 | 928 | 2.5E-44 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 59 | 166 | 5.02E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 947 | 1024 | 4.59E-24 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 954 | 1026 | 2.4E-27 | IPR013083 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 41 | 174 | 4.7E-5 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 645 | 739 | 1.4E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 741 | 948 | 1.5E-30 | - |
| SMART | SM00504 | Ubox_2 | 957 | 1019 | 1.7E-23 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 953 | 1026 | 30.439819 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 668 | 938 | 21.460371 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
| Coils | Coil | Coil | 599 | 640 | - | - |
| Coils | Coil | Coil | 386 | 406 | - | - |
| Coils | Coil | Coil | 563 | 583 | - | - |
| Coils | Coil | Coil | 471 | 519 | - | - |
| Coils | Coil | Coil | 535 | 555 | - | - |
| Coils | Coil | Coil | 330 | 378 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 1.5E-121 |
| RefSeq | XP_014660103.1 | U-box domain-containing protein 33 isoform X1 [Setaria italica] | 0 |
| Q5WA76 | U-box domain-containing protein 70 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB70 PE=1 SV=1 | 1.87E-129 | |
| TrEMBL | A0A4V6DD86 | RING-type E3 ubiquitin transferase OS=Setaria viridis OX=4556 GN=SEVIR_1G269300v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH07.2922, BH07.2744, CH07.2816 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0140170, gene-QOZ80_2BG0195840 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0602150.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G017570, Oco04G018320 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g44610.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G223200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0205955 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G024000 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6AG037900 |
| Poaceae | Triticum aestivum | 2 | TraesCS6A02G245400.1, TraesCS6D02G227800.1 |
| Poaceae | Zea mays | 1 | Zm00001eb186880_P001 |