Basic Information
Locus ID:
BH07.2740
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 34264063 | 34268224 | + | BH07.2740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 101,319.74 Da | 51.38 | 80.72 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 56 | 212 | 2.21221E-39 | - |
| CDD | cd14066 | STKc_IRAK | 547 | 815 | 2.83744E-85 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 841 | 882 | 2.49956E-22 | - |
| Pfam | PF00069 | Protein kinase domain | 544 | 772 | 2.5E-42 | IPR000719 |
| Pfam | PF04564 | U-box domain | 838 | 908 | 1.6E-16 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 832 | 907 | 7.15E-22 | - |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 55 | 176 | 3.35E-6 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 516 | 805 | 1.89E-69 | IPR011009 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 836 | 910 | 5.4E-27 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 526 | 613 | 2.4E-28 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 49 | 177 | 2.2E-8 | IPR014729 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 614 | 824 | 1.2E-47 | - |
| SMART | SM00220 | serkin_6 | 541 | 812 | 3.2E-30 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 840 | 903 | 3.3E-28 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 541 | 816 | 35.594372 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 836 | 910 | 33.482738 | IPR003613 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 547 | 568 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 659 | 671 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 356 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 279 | - | - |
| Coils | Coil | Coil | 477 | 511 | - | - |
| Coils | Coil | Coil | 421 | 441 | - | - |
| Coils | Coil | Coil | 369 | 389 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 4.15E-202 |
| RefSeq | XP_039790851.1 | U-box domain-containing protein 33-like [Panicum virgatum] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 4.0E-201 | |
| TrEMBL | A0A8T0X6A6 | RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_1NG392000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology