halophFGD

Basic Information

Locus ID: BH07.2676

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Domain Homologous to E6-AP Carboxyl Terminus with

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
BH07	33709886	33714567	-	BH07.2676

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.06	78,113.27 Da	55.37	68.04	-0.60

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00143	PP2Cc	17	176	1.52836E-31	IPR001932
Pfam	PF00481	Protein phosphatase 2C	13	75	1.7E-4	IPR001932
Pfam	PF00481	Protein phosphatase 2C	111	176	5.4E-19	IPR001932
Pfam	PF00481	Protein phosphatase 2C	439	519	5.2E-8	IPR001932
Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	183	298	3.8E-15	IPR000477
SUPERFAMILY	SSF56672	DNA/RNA polymerases	183	304	5.34E-8	IPR043502
SUPERFAMILY	SSF81606	PP2C-like	439	536	3.79E-15	IPR036457
SUPERFAMILY	SSF81606	PP2C-like	15	177	2.09E-29	IPR036457
Gene3D	G3DSA:3.60.40.10	-	424	569	6.4E-19	IPR036457
Gene3D	G3DSA:3.60.40.10	-	4	178	3.4E-34	IPR036457
Gene3D	G3DSA:3.30.70.270	-	194	266	5.1E-6	IPR043128
SMART	SM00332	PP2C_4	2	532	4.9E-30	IPR001932
ProSiteProfiles	PS50878	Reverse transcriptase (RT) catalytic domain profile.	1	300	12.749928	IPR000477
ProSiteProfiles	PS51746	PPM-type phosphatase domain profile.	1	534	33.2682	IPR001932
MobiDBLite	mobidb-lite	consensus disorder prediction	647	687	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	591	605	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	576	714	-	-
Coils	Coil	Coil	545	572	-	-

Gene Ontology

Molecular Function:

GO:0016791 (phosphatase activity)

KEGG Pathway

KO Term:

K10589 (ubiquitin-protein ligase E3 C [EC:2.3.2.26])

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT4G31860.2	Protein phosphatase 2C family protein.	2.93E-31
RefSeq	XP_051206030.1	uncharacterized protein LOC127321018 [Lolium perenne]	9.13E-156
Swiss-Prot	Q6K5I0	Probable protein phosphatase 2C 20 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0600000 PE=3 SV=2	9.24E-44
TrEMBL	A0A3L6RK86	Retrovirus-related Pol polyprotein LINE-1 OS=Panicum miliaceum OX=4540 GN=C2845_PM13G13670 PE=4 SV=1	2.43E-156

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg22385, Sbi_jg25863
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00007598, GOSA_00020792
Amaranthaceae	Suaeda glauca	1	Sgl20234
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000007376, gene:ENSEOMG00000009922 ... gene:ENSEOMG00000014439, gene:ENSEOMG00000021206, gene:ENSEOMG00000032143, gene:ENSEOMG00000044692
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.4AG0021820, CQ.Regalona.r1.6AG0000030 ... CQ.Regalona.r1.6AG0001550
Asteraceae	Flaveria trinervia	16	Ftri11G29042, Ftri15G13285, Ftri15G27723, Ftri16G20483 ... Ftri17G20434, Ftri18G10643, Ftri18G13665, Ftri3G02489, Ftri4G14462, Ftri5G10762, Ftri6G09660, Ftri7G32935, Ftri7G33047, Ftri8G20906, Ftri9G08243, Ftri9G31977
Poaceae	Echinochloa crus-galli	51	AH01.164, AH01.394, AH02.1450, AH02.1545, AH02.2093, AH05.25 ... AH02.4536, AH03.1525, AH03.2542, AH03.3965, AH04.1546, AH04.857, AH05.694, AH07.2325, AH07.2725, AH08.227, BH01.3744, BH01.442, BH01.4776, BH01.4855, BH02.3376, BH03.266, BH05.2619, BH06.1851, BH06.1999, BH06.2556, BH06.2850, BH07.2229, BH07.2676, BH07.4192, BH08.1004, BH09.493, CH01.2044, CH01.2149, CH01.2234, CH01.3240, CH01.3413, CH02.3232, CH03.2630, CH03.3774, CH04.126, CH04.165, CH04.1903, CH05.3093, CH05.4464, CH07.2011, CH07.2447, CH09.1936, CH09.2670, CH09.2864, CH09.627
Poaceae	Eleusine coracana subsp. coracana	1	gene-QOZ80_4BG0332600
Poaceae	Hordeum vulgare	36	HORVU.MOREX.r3.1HG0031420.1.CDS1 ... HORVU.MOREX.r3.1HG0083430.1.CDS1, HORVU.MOREX.r3.2HG0119660.1.CDS1, HORVU.MOREX.r3.2HG0157690.1.CDS1, HORVU.MOREX.r3.2HG0172390.1, HORVU.MOREX.r3.2HG0197280.1.CDS1, HORVU.MOREX.r3.3HG0277230.1.CDS1, HORVU.MOREX.r3.3HG0287370.1.CDS1, HORVU.MOREX.r3.4HG0361670.1.CDS1, HORVU.MOREX.r3.4HG0362580.1.CDS1, HORVU.MOREX.r3.4HG0389020.1.CDS1, HORVU.MOREX.r3.4HG0413260.1.CDS1, HORVU.MOREX.r3.5HG0429430.1.CDS1, HORVU.MOREX.r3.5HG0432680.1.CDS1, HORVU.MOREX.r3.5HG0455710.1.CDS1, HORVU.MOREX.r3.5HG0458740.1, HORVU.MOREX.r3.5HG0468170.1, HORVU.MOREX.r3.5HG0470180.1.CDS1, HORVU.MOREX.r3.5HG0470490.1.CDS1, HORVU.MOREX.r3.5HG0484160.1.CDS1, HORVU.MOREX.r3.6HG0539110.1.CDS1, HORVU.MOREX.r3.6HG0555430.1, HORVU.MOREX.r3.6HG0558830.1.CDS1, HORVU.MOREX.r3.6HG0585190.1.CDS1, HORVU.MOREX.r3.6HG0605780.1.CDS1, HORVU.MOREX.r3.6HG0608230.1.CDS1, HORVU.MOREX.r3.6HG0608930.1.CDS1, HORVU.MOREX.r3.6HG0609870.1.CDS1, HORVU.MOREX.r3.6HG0614030.1, HORVU.MOREX.r3.7HG0665290.1.CDS1, HORVU.MOREX.r3.7HG0675970.1.CDS1, HORVU.MOREX.r3.7HG0686270.1.CDS1, HORVU.MOREX.r3.7HG0690540.1.CDS1, HORVU.MOREX.r3.7HG0694470.1.CDS1, HORVU.MOREX.r3.7HG0706070.1.CDS1, HORVU.MOREX.r3.7HG0712050.1.CDS1
Poaceae	Lolium multiflorum	14	gene-QYE76_000087, gene-QYE76_028678, gene-QYE76_030060 ... gene-QYE76_031598, gene-QYE76_033915, gene-QYE76_036735, gene-QYE76_041797, gene-QYE76_049256, gene-QYE76_050316, gene-QYE76_054552, gene-QYE76_057534, gene-QYE76_063234, gene-QYE76_067297, gene-QYE76_068230
Poaceae	Oryza coarctata	1	Oco02G011730
Poaceae	Paspalum vaginatum	12	gene-BS78_01G159000, gene-BS78_01G509100, gene-BS78_K023600 ... gene-BS78_02G158400, gene-BS78_03G144500, gene-BS78_06G011500, gene-BS78_07G103100, gene-BS78_08G171400, gene-BS78_09G092300, gene-BS78_09G127100, gene-BS78_K094000, gene-BS78_K232400
Poaceae	Sporobolus alterniflorus	58	Chr01G023790, Chr01G030010, Chr01G030020, Chr02G006560 ... Chr03G008690, Chr03G014360, Chr03G020670, Chr04G004920, Chr04G012320, Chr04G016020, Chr05G014850, Chr05G034680, Chr06G003600, Chr06G022090, Chr06G025580, Chr07G002900, Chr07G002910, Chr07G004700, Chr07G011230, Chr07G024870, Chr08G005710, Chr09G009570, Chr09G009580, Chr09G011790, Chr10G005280, Chr10G005290, Chr10G015210, Chr10G016380, Chr10G016940, Chr11G022120, Chr12G011970, Chr12G011980, Chr12G028930, Chr12G033610, Chr14G008010, Chr14G008620, Chr15G006070, Chr15G006080, Chr15G017130, Chr15G018500, Chr17G004410, Chr19G015230, Chr20G005550, Chr20G007320, Chr20G008180, Chr20G010600, Chr20G011050, Chr21G005620, Chr21G006060, Chr23G008510, Chr23G017330, Chr23G017340, Chr23G018540, Chr26G012240, Chr26G013860, Chr26G016800, Chr27G001090, Chr31G001510
Poaceae	Thinopyrum elongatum	6	Tel2E01G536000, Tel5E01G418900, Tel5E01G419000 ... Tel6E01G071300, Tel6E01G071400, Tel7E01G484600
Poaceae	Triticum dicoccoides	1	gene_TRIDC7AG060430
Poaceae	Zoysia japonica	1	nbis-gene-4890
Solanaceae	Lycium barbarum	88	gene-LOC132601412, gene-LOC132601432, gene-LOC132601565 ... gene-LOC132601573, gene-LOC132601684, gene-LOC132602294, gene-LOC132602375, gene-LOC132602429, gene-LOC132603304, gene-LOC132603305, gene-LOC132604055, gene-LOC132604455, gene-LOC132606488, gene-LOC132607687, gene-LOC132607709, gene-LOC132607761, gene-LOC132607768, gene-LOC132607917, gene-LOC132607943, gene-LOC132607992, gene-LOC132607993, gene-LOC132608100, gene-LOC132608378, gene-LOC132609516, gene-LOC132609560, gene-LOC132609609, gene-LOC132610374, gene-LOC132611779, gene-LOC132611785, gene-LOC132611807, gene-LOC132611832, gene-LOC132611837, gene-LOC132612053, gene-LOC132612165, gene-LOC132612201, gene-LOC132612646, gene-LOC132612968, gene-LOC132612997, gene-LOC132613026, gene-LOC132613111, gene-LOC132613125, gene-LOC132613148, gene-LOC132613217, gene-LOC132613435, gene-LOC132613816, gene-LOC132618126, gene-LOC132618148, gene-LOC132620134, gene-LOC132620753, gene-LOC132621465, gene-LOC132624192, gene-LOC132624359, gene-LOC132624397, gene-LOC132624406, gene-LOC132628580, gene-LOC132628589, gene-LOC132628681, gene-LOC132628733, gene-LOC132628864, gene-LOC132629048, gene-LOC132630311, gene-LOC132631151, gene-LOC132631279, gene-LOC132631539, gene-LOC132631704, gene-LOC132633629, gene-LOC132637024, gene-LOC132637083, gene-LOC132637342, gene-LOC132637683, gene-LOC132637737, gene-LOC132638126, gene-LOC132639158, gene-LOC132639500, gene-LOC132639506, gene-LOC132639599, gene-LOC132639606, gene-LOC132639741, gene-LOC132639932, gene-LOC132640665, gene-LOC132640975, gene-LOC132641207, gene-LOC132641299, gene-LOC132642290, gene-LOC132642335, gene-LOC132642451, gene-LOC132644299, gene-LOC132644396
Solanaceae	Solanum pennellii	1	gene-LOC107016424
Tamaricaceae	Reaumuria soongarica	22	MSTRG.2861_chr02_-, STRG.10221_chr06_+, STRG.10559_chr07_- ... STRG.11171_chr05_-, STRG.14935_chr08_-, STRG.17875_chr09_+, STRG.2271_chr01_+, STRG.24870_chr08_+, STRG.26144_chr11_+, STRG.26385_chr11_+, STRG.26543_chr11_-, STRG.26574_chr11_+, STRG.28350_chr04_+, STRG.30337_chr10_-, STRG.31126_chr11_+, STRG.31648_chr11_+, STRG.32148_chr09_+, STRG.3814_chr02_-, STRG.4509_chr03_-, STRG.8526_chr06_+, STRG.8964_chr03_+, STRG.9014_chr03_-