Basic Information
Locus ID:
BH07.2625
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Myb/SANT-like DNA-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 33373044 | 33384819 | - | BH07.2625 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 170,901.16 Da | 58.26 | 62.35 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12203 | GT1 | 1314 | 1380 | 9.10461E-28 | - |
| CDD | cd12203 | GT1 | 996 | 1060 | 2.60278E-27 | - |
| Pfam | PF13837 | Myb/SANT-like DNA-binding domain | 995 | 1081 | 1.1E-19 | IPR044822 |
| Pfam | PF13837 | Myb/SANT-like DNA-binding domain | 1315 | 1402 | 2.5E-21 | IPR044822 |
| Gene3D | G3DSA:1.10.10.60 | - | 1316 | 1378 | 1.0E-21 | - |
| Gene3D | G3DSA:1.10.10.60 | - | 997 | 1058 | 1.7E-23 | - |
| SMART | SM00717 | sant | 993 | 1055 | 0.0032 | IPR001005 |
| SMART | SM00717 | sant | 1312 | 1375 | 3.9E-4 | IPR001005 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 996 | 1053 | 6.992072 | IPR001005 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 1314 | 1373 | 7.677204 | IPR001005 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 460 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1531 | 1556 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1436 | 1455 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1269 | 1294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1436 | 1515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1128 | 1158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1541 | 1556 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 415 | 458 | - | - |
| Coils | Coil | Coil | 1211 | 1231 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76880.1 | Duplicated homeodomain-like superfamily protein. | 4.5E-80 |
| RefSeq | XP_025798824.1 | trihelix transcription factor GTL1-like isoform X1 [Panicum hallii] | 1.02E-234 |
| Q9C6K3 | Trihelix transcription factor DF1 OS=Arabidopsis thaliana OX=3702 GN=DF1 PE=4 SV=1 | 4.37E-79 | |
| TrEMBL | A0A2T7F9Q0 | Myb-like domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G320000 PE=4 SV=1 | 1.24E-236 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 11 | AH03.1681, BH02.1694, BH03.321, BH04.871, BH07.2625 ... |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_3AG0221350, gene-QOZ80_3BG0267940 ... |
| Poaceae | Oryza coarctata | 4 | Oco03G007240, Oco10G013850, Oco11G010490, Oco19G003500 |
| Poaceae | Paspalum vaginatum | 6 | gene-BS78_06G044000, gene-BS78_08G060500, gene-BS78_K024200 ... |
| Poaceae | Sporobolus alterniflorus | 9 | Chr01G030640, Chr01G034250, Chr03G009660, Chr05G004500 ... |
| Poaceae | Zea mays | 1 | Zm00001eb384270_P001 |
| Poaceae | Zoysia japonica | 11 | nbis-gene-1295, nbis-gene-27399, nbis-gene-33913 ... |