Basic Information
Locus ID:
BH07.2584
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
UBA-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 33052170 | 33053006 | + | BH07.2584 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.05 | 30,450.95 Da | 58.15 | 59.42 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14273 | UBA_TAP-C_like | 9 | 40 | 1.32077E-7 | - |
| Pfam | PF14555 | UBA-like domain | 3 | 44 | 8.2E-12 | - |
| SUPERFAMILY | SSF46934 | UBA-like | 3 | 43 | 2.89E-7 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 2 | 44 | 1.6E-8 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 172 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 239 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004955104.1 | plant UBX domain-containing protein 7 [Setaria italica] | 1.28E-61 |
| TrEMBL | K3YZ63 | UBX domain-containing protein OS=Setaria italica OX=4555 GN=101775998 PE=4 SV=1 | 2.89E-60 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH03.861, AH07.2773, BH03.985, BH07.2584, CH07.2650 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0138910, gene-QOZ80_2BG0194560 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0117420.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_007415, gene-QYE76_023963, gene-QYE76_023966 ... |
| Poaceae | Oryza coarctata | 3 | Oco04G017190, Oco13G005150, Oco14G006110 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g42800.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G208100 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G013060, Chr09G024940, Chr09G024970, Chr15G015460 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2BG020080, gene_TRIDC6AG036470 |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G133200.1.cds1, TraesCS2B02G156700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb185740_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-27667, nbis-gene-9357 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13983 |