Basic Information
Locus ID:
BH07.2575
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 32985642 | 32986430 | - | BH07.2575 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.63 | 28,019.47 Da | 68.97 | 67.21 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 41 | 94 | 1.21422E-23 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 43 | 92 | 3.4E-8 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 40 | 105 | 3.53E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 31 | 150 | 5.0E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 43 | 92 | 1.0E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 43 | 93 | 12.474524 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 58 | 67 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 173 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 6.97E-30 |
| RefSeq | XP_004953239.1 | E3 ubiquitin-protein ligase RMA1H1 [Setaria italica] | 3.14E-124 |
| Q8GUK7 | E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1 | 6.78E-29 | |
| TrEMBL | K3YV69 | RING-type E3 ubiquitin transferase OS=Setaria italica OX=4555 GN=101779906 PE=4 SV=1 | 7.1E-123 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology