Basic Information
Locus ID:
BH07.2472
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate- level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 31900811 | 31918646 | + | BH07.2472 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 317,434.19 Da | 48.99 | 76.52 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13952 | Domain of unknown function (DUF4216) | 1534 | 1599 | 1.2E-12 | IPR025312 |
| Pfam | PF13960 | Domain of unknown function (DUF4218) | 1274 | 1380 | 8.4E-38 | IPR025452 |
| Pfam | PF13963 | Transposase-associated domain | 605 | 678 | 5.9E-18 | IPR029480 |
| Pfam | PF08442 | ATP-grasp domain | 29 | 237 | 3.5E-60 | IPR013650 |
| Pfam | PF00549 | CoA-ligase | 297 | 417 | 4.4E-26 | IPR005811 |
| Pfam | PF02992 | Transposase family tnp2 | 887 | 1090 | 5.0E-84 | IPR004242 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 2700 | 2796 | 1.61E-6 | IPR038765 |
| SUPERFAMILY | SSF52210 | Succinyl-CoA synthetase domains | 274 | 418 | 7.2E-53 | IPR016102 |
| SUPERFAMILY | SSF56059 | Glutathione synthetase ATP-binding domain-like | 28 | 273 | 2.94E-66 | - |
| Gene3D | G3DSA:3.40.50.261 | - | 275 | 421 | 6.9E-59 | IPR016102 |
| Gene3D | G3DSA:3.30.470.20 | - | 28 | 272 | 4.8E-84 | - |
| Gene3D | G3DSA:3.30.1490.20 | - | 48 | 139 | 4.8E-84 | IPR013815 |
| TIGRFAM | TIGR01016 | sucCoAbeta: succinate-CoA ligase, beta subunit | 29 | 419 | 1.4E-133 | IPR005809 |
| ProSiteProfiles | PS50975 | ATP-grasp fold profile. | 36 | 262 | 9.099541 | IPR011761 |
| ProSitePatterns | PS01217 | ATP-citrate lyase / succinyl-CoA ligases family signature 3. | 292 | 316 | - | IPR017866 |
| Hamap | MF_00558 | Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. | 28 | 421 | 38.728081 | IPR005809 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 468 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 713 | 739 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2587 | 2616 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 714 | 730 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2508 | 2556 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1601 | 1622 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 533 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 505 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2468 | 2491 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1870 | 1902 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2359 | 2383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2444 | 2557 | - | - |
| Coils | Coil | Coil | 2310 | 2344 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko00020 (Citrate cycle (TCA cycle))
map00020 (Citrate cycle (TCA cycle))
ko00640 (Propanoate metabolism)
map00640 (Propanoate metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G20420.1 | ATP citrate lyase (ACL) family protein. | 1.44E-230 |
| RefSeq | XP_039778865.1 | uncharacterized protein LOC120646298 [Panicum virgatum] | 0 |
| Q6K9N6 | Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0621700 PE=1 SV=1 | 3.38E-258 | |
| TrEMBL | Q2QQL4 | Transposon protein, putative, CACTA, En/Spm sub-class OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g30630 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |