Basic Information
Locus ID:
BH07.2393
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
AT hook motif family protein, expressed
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 31092295 | 31098729 | - | BH07.2393 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 87,759.85 Da | 47.38 | 61.55 | -0.98 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04508 | TUDOR | 574 | 618 | 0.00491509 | IPR002999 |
| SUPERFAMILY | SSF48371 | ARM repeat | 11 | 242 | 2.38E-10 | IPR016024 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 571 | 612 | 3.84E-8 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 1 | 282 | 2.9E-6 | IPR011989 |
| Gene3D | G3DSA:2.30.30.140 | - | 572 | 618 | 4.3E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 710 | 769 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 568 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 779 | 797 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 523 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 642 | 668 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 625 | 815 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 526 | 544 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 545 | 565 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 356 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 673 | 691 | - | - |
| Coils | Coil | Coil | 780 | 800 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31880.2 | 1.22E-64 | |
| RefSeq | XP_025804875.1 | ABC transporter F family member 4-like isoform X1 [Panicum hallii] | 0 |
| Q8GUP3 | Sister chromatid cohesion protein PDS5 homolog C OS=Arabidopsis thaliana OX=3702 GN=PDS5C PE=1 SV=1 | 2.34E-61 | |
| TrEMBL | A0A3L6QHV2 | Tudor domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM12G20300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology